Bertil Schmidt, Jorge González-Domínguez, Christian Hundt, Moritz Schlarb,
"Parallel Programming: Concepts and Practice".
Morgan Kaufmann,
November 2017.
[DL].
Research Publications
Bieito Beceiro, Jorge González-Domínguez, Laura Morán-Fernández, Verónica Bolón-Canedo, Juan Touriño,
"CUDA Acceleration of MI-based Feature Selection Methods".
Journal of Parallel and Distributed Computing,
190, 104901 (August 2024).
[DL].
Aurelio López-Fernández, Francisco A. Gómez-Vela, Jorge González-Domínguez, Parameshachari Bidare-Divakarachari,
bioScience: A new python science library for high-performance computing bioinformatics analytics.
SoftwareX,
26, 101666 (May 2024).
[DL].
Roberto R. Expósito, Jorge González-Domínguez,
BigDEC: a multi-algorithm Big Data tool based on the k-mer spectrum method for scalable short-read error correction.
Future Generation Computer Systems,
154, pages 314-329 (May 2024).
[DL].
Alejandro Fernández-Fraga, Jorge González-Domínguez, María J. Martín,
"PARamrfinder: Detecting allele-specific DNA methylation on Multicore Clusters".
Journal of Supercomputing,
80, pages 14573-14599 (March 2024).
[DL].
Alejandro Fernández-Fraga, Jorge González-Domínguez, María J. Martín,
"Applying dynamic balancing to improve the performance of MPI parallel genomics applications".
39th ACM/SIGAPP Symposium On Applied Computing (SAC 2024),
Avila, Spain,
March 2024.
[DL]
Alejandro Fernández-Fraga, Jorge González-Domínguez, Juan Touriño,
"ParRADMeth: Identification of Differentially Methylated Regions on Multicore Clusters".
IEEE/ACM Transactions on Computational Biology and Bioinformatics,
20 (3), pages 2041-2049 (May 2023).
[DL].
Iñaki Amatria-Barral, Jorge González-Domínguez, Juan Touriño,
"Parallel construction of RNA databases for extensive lncRNA-RNA interaction prediction".
38th ACM/SIGAPP Symposium On Applied Computing (SAC 2023),
Tallinn, Estonia,
March 2023.
[DL]
Iñaki Amatria-Barral, Jorge González-Domínguez, Juan Touriño,
"PATO: Genome-wide prediction of lncRNA--DNA triple helices".
Bioinformatics,
39 (3), btad134 (March 2023) .
[DL].
Iñaki Amatria-Barral, Jorge González-Domínguez, Juan Touriño,
"pRIblast: a highly efficient parallel application for comprehensive lncRNA-RNA interaction prediction".
Future Generation Computer Systems,
138, pages 270-279 (January 2023).
[DL].
Bieito Beceiro, Jorge González-Domínguez, Juan Touriño,
"Parallel-FST: a Feature Selection Library for Multicore Clusters".
Journal of Parallel and Distributed Computing,
169, pages 106-116 (November 2022).
[DL].
Christian Ponte-Fernández, Jorge González-Domínguez, María J. Martín,
"A SIMD Algorithm for the Detection of Epistatic Interactions of any Order".
Future Generation Computer Systems,
132, pages 108-123 (July 2022).
[DL].
Christian Ponte-Fernández, Jorge González-Domínguez, María J. Martín,
"Fiuncho: a Program for Any-Order Epistasis Detection in CPU Clusters".
Journal of Supercomputing,
78, pages 15338-15357 (April 2022).
[DL].
Borja González-Seoane, Christian Ponte-Fernández, Jorge González-Domínguez, María J. Martín,
"PyToxo: a Python tool for calculating penetrance tables of high-order epistasis models".
BMC Bioinformatics,
23, article 117 (April 2022).
[DL].
Basilio B. Fraguela, Diego Andrade, Jorge González-Domínguez,
"ScalaParBiBit: Scaling the Binary Biclustering in Distributed-Memory Systems".
Cluster Computing-The Journal of Networks Software Tools and Applications,
24, pages 2249-2268 (March 2021).
[DL].
Jorge González-Domínguez,
Book Chapter: Fast and Accurate Multiple Sequence Alignment with MSAProbs-MPI.
Multiple Sequence Alignment (Methods in Molecular Biology series, Springer),
2231, pages 39-47 (December 2020).
[DL].
Roberto R. Expósito, Jorge González-Domínguez, Juan Touriño,
"SMusket: Spark-based DNA error correction on distributed-memory systems".
Future Generation Computer Systems,
111, 698-713 (October 2020).
[DL].
Christian Ponte-Fernández, Jorge González-Domínguez, María J. Martín,
"Fast Search of Third-Order Epistatic Interactions on CPU and GPU Clusters".
International Journal of High Performance Computing Applications,
34(1), 20-29 (January 2020).
[DL].
Uxía Casal, Jorge González-Domínguez, María J. Martín,
"Analysis of the Construction of Similarity Matrices on Multi-core and Many-core Platforms Using Different Similarity Metrics".
19th International Conference on Computational Science (ICCS 2019),
Faro, Portugal,
June 2019.
[Slides][DL].
Jorge González-Domínguez, Roberto R. Expósito,
Book Chapter: HPC Tools to Deal with Microarray Data.
Microarray Bioinformatics (Methods in Molecular Biology series, Springer),
1986, pages 227-243 (May 2019).
[DL].
Roberto R. Expósito,Jorge Veiga, Jorge González-Domínguez, Juan Touriño,
"MarDRe: Efficient MapReduce-Based Removal of Duplicate DNA Reads in the Cloud".
Bioinformatics,
33(17), pages 2762-2764 (September 2017).
[DL].
Daniel Junger, Christian Hundt, Jorge González-Domínguez, Bertil Schmidt,
"Speed and Accuracy Improvement of Higher-Order Epistasis Detection on CUDA-Enabled GPUs".
Cluster Computing-The Journal of Networks Software Tools and Applications,
20(3), pages 1899-1908 (August 2017).
[DL].
Christian Ponte, Jorge González-Domínguez, María J. Martín,
"Evaluation of OpenMP SIMD Directives on Xeon Phi Coprocessors".
15th International Conference on High Performance Computing and Simulation (HPCS 2017),
Genoa, Italy,
July 2017.
[DL].
Daniel Junger, Christian Hundt, Jorge González-Domínguez, Bertil Schmidt,
"Ultra-Fast Detection of Higher-Order Epistatic Interactions on GPUs".
4th International Workshop on Parallelism in Bioinformatics (PBio 2016),
Grenoble, France,
August 2016.
[DL]
Jan C. Kässens, Lars Wienbrandt, Manfred Schimmler, Jorge González-Domínguez, Bertil Schmidt,
"Combining GPU and FPGA Technology for Efficient Exhaustive Interaction Analysis in GWAS".
27th IEEE International Conference on Application-specific Systems, Architectures and Processors (ASAP 2016),
London, United Kingdom,
July 2016.
[DL]
Jorge González-Domínguez, Lars Wienbrandt, Jan C. Kässens, David Ellinghaus, Manfred Schimmler, Bertil Schmidt,
"Parallelizing Epistasis Detection in GWAS on FPGA and GPU-accelerated Computing Systems".
IEEE/ACM Transactions on Computational Biology and Bioinformatics,
12(5), pages 982-994 (October 2015).
[DL]
Jan C. Kässens, Lars Wienbrandt, Jorge González-Domínguez, Bertil Schmidt, Manfred Schimmler,
"High-Speed Exhaustive 3-locus Interaction Epistasis Analysis on FPGAs".
The Journal of Computational Science,
9, pages 131-136 (May 2015).
[DL]
Jorge González-Domínguez, Bertil Schmidt,
"Using a CUDA-Accelerated PGAS Model on a GPU Cluster for Bioinformatics".
GPU Technology Conference (GTC 2015),
San Jose, CA, USA,
March 2015.
[Slides]
Damián A. Mallón, Guillermo L. Taboada, Carlos Teijeiro, Jorge González-Domínguez, Andrés Gómez, Brian Wibecan,
"Scalable PGAS Collective Operations in NUMA Clusters".
Cluster Computing-The Journal of Networks Software Tools and Applications,
17(4), pages 1473-1495 (November 2014).
[DL]
Sandra Catalán, Jorge González-Domínguez, Rafael Mayo, Enrique S. Quintana-Ortí,
"Analyzing the Energy Efficiency of the Memory Subsystem in Multicore Processors".
12th IEEE International Symposium on Parallel and Distributed Processing with Applications (ISPA 2014),
Milano, Italy,
August 2014.
[DL]
Roberto R. Expósito, Guillermo L. Taboada, Sabela Ramos, Jorge González-Domínguez, Juan Touriño, Ramón Doallo,
"Analysis of I/O Performance on an Amazon EC2 Cluster Compute and High I/O Platform".
The Journal of Grid Computing,
11(4), pages 613-631 (December 2013).
[DL]
Jorge González-Domínguez, María J. Martín, Guillermo L. Taboada, Juan Touriño, Ramón Doallo, Andrés Gómez,
"A Parallel Numerical Library for UPC".
15th International European Conference on Parallel and Distributed Computing (Euro-Par 2009),
Lecture Notes on Computer Science, vol 5704, pp 630-641.
Delft, The Netherlands,
August 2009.
[Slides][DL]