María J. Martín Home Page

Full Professor

Computer Architecture Group
Universidade da Coruña

Phone: +34-981-167000, ext. 1324

Fax: +34-981-167160

E-mail: mariam@udc.es

Research Interests

Checkpointing of parallel codes (CPPC Project )
GWAS (Genome-Wide Association Studies) y HPC
Parallel algorithms and applications

Recent Publications

C. Ponte-Fernández, J. González-Domínguez, M.J. Martín. Fiuncho: a program for any-order epistasis detection in CPU clusters, The Journal of Supercomputing, 78:15338-15357, 2022.
B. González-Seoane, C. Ponte-Fernández, J. González-Domínguez and M.J. Martín. PyToxo: a Python tool for calculating penetrance tables of high-order epistasis models, BMC Bioinformatics, 23:117, 2022.
C. Ponte-Fernández, J. González-Domínguez and M.J. Martín. A SIMD algorithm for the detection of epistatic interactions of any order, Future Generation Computer Systems, 132:108-123, 2022.
C. Ponte-Fernández, J. González-Domínguez, A. Carvajal-Rodriguez and M.J. Martín. Evaluation of Existing Methods for High-Order Epistasis Detection, IEEE/ACM Transactions on Computational Biology and Bioinformatics, 19(2):912-926, 2022.
C. Ponte-Fernández, J. González-Domínguez, A. Carvajal-Rodríguez and M.J. Martín. Toxo: a Library for Calculating Penetrance Tables of High-Order Epistasis Models. BMC Bioinformatics,
21:138, 2020.
N. Losada, P. González, M.J. Martín, G. Bosilca, A. Bouteiller, K. Teranishi. Fault Tolerance of MPI Applications in Exascale Systems: The ULFM Solution. Future Generation Computer Systems, 106:467481, May 2020.
C. Ponte-Fernández, J. González-Domínguez and M.J. Martín. Fast Search of Third-Order Epistatic Interactions on CPU and GPU Clusters. International Journal of High Performance Computing Applications, 34(1):20-29, 2020.
U. Casal, J. González-Domínguez y M.J. Martín. Parallelization of ARACNe, an Algorithm for the Reconstruction of Gene Regulatory Networks. II Congreso XoveTIC, A Coruña, Septiembre 2019.
U. Casal, J. González-Domínguez and M.J. Martín. Analysis of the Construction of Similarity Matrices on Multi-Core and Many-Core Platforms using Different Similarity Metrics. International Conference on Computational Science, ICCS 2019, Faro, Portugal, June 2019.
D.R. Penas, A. Gómez, B.B. Fraguela, M.J. Martín and S. Cerviño. Enhanced Global Optimization Methods Applied to Complex Fisheries Stock Assessment Models. Applied Soft Computing Journal, 77:50-66, 2019.
N. Losada, G. Bosilca, A. Bouteiller, P. González, M.J. Martín. Local rollback for resilient MPI applications with application-level checkpointing and message logging. Future Generation Computer Systems, 91:450-464, February 2019.
J. González-Domínguez, M.J. Martín. MPIGeneNet: Parallel Calculation of Gene Co-Expression Networks on Multicore Clusters. IEEE/ACM Transactions on Computational Biology and Bioinformatics, 15(5): 1732-1737, Sept.-Oct. 2018
P. González, N. Losada and M.J. Martín. Insights into Application-Level Solutions towards Resilient MPI Applications. International Conference on High Performance Computing & Simulation (HPCS 2018), Orleans, France. July 2018.
N. Losada, G. Bosilca, A. Bouteiller, P. González, T. Herault and M.J. Martín. Local Rollback of MPI Applications by Combining Application-Level Checkpointing and Message Logging. 18th SIAM Conference on Parallel Processing for Scientic Computing, March 2018, Tokyo, Japan.
C. Ponte, J. González-Domínguez and María J. Martín. Evaluation of OpenMP SIMD Directives on Xeon Phi Coprocessors. International Conference on High Performance Computing & Simulation (HPCS 2017), pp. 389-395, Genoa, Italy, July 2017.
N. Losada, B.B. Fraguela, P. González, M.J. Martín. A portable and adaptable fault tolerance solution for heterogeneous applications. Journal of Parallel and Distributed Computing, 104:146-158, June 2017.
J. González-Domínguez and María J. Martín. Fast Parallel Construction of Correlation Similarity Matrices for Gene Co-Expression Networks on Multicore Clusters. Procedia Computer Science, 108, pp. 485-494, 2017
J. González-Domínguez, B. Remeseiro, M.J. Martín. Parallel Definition of Tear Film Maps on Distributed-Memory Clusters for the Support of Dry Eye Diagnosis. Computer Methods and Programs in Biomedicine, 139: 51-60, February 2017.
N. Losada, M.J. Martín, P. González. Assessing resilient versus stop-and-restart fault-tolerant solutions in MPI applications. The Journal of Supercomputing, 73(1): 316-329, 2017.
N. Losada, I. Cores, M.J. Martín and P. González. Resilient MPI applications using an application-level checkpointing framework and ULFM. The Journal of Supercomputing, 73(1): 100-113, 2017.
N. Losada, M.J. Martín, G. Rodríguez and P. González. Portable Application-level Checkpointing for Hybrid MPI-OpenMP Applications. International Conference on Computational Science, 2016, San Diego, California, USA, June 2016.
J. González-Domínguez, B. Remeseiro and M. J. Martín. Acceleration of Tear Film Map Definition on Multicore Systems. International Conference on Computational Science, ICCS 2016, San Diego, California, USA, June 2016
I. Cores, P. González, E. Jeannot, M. J. Martín and G. Rodríguez. An application-level solution for the dynamic reconguration of MPI applications. 12th International Meeting on High Performance Computing for Computational Science, VECPAR 2016, Porto, Portugal, June 2016.
I. Cores, M. Rodríguez, P. González, M.J. Martín. Reducing the overhead of an MPI application-level migration approach. Parallel Computing, 54:72-82, May 2016.
N. Losada, M.J. Martín, G. Rodríguez and P. González. I/O optimization in the checkpointing of OpenMP parallel applications. 23rd Euromicro International Conference on Parallel, Distributed and Network-based Processing (PDP 2015), pp.222-229, Turku, Finland, March 4-6
2015.
I. Cores, G. Rodríguez, M.J. Martín, P. González. In-memory application-level checkpoint-based migration for MPI programs. The Journal of Supercomputing, 70(2): 660-670, November 2014.
J. González-Domínguez, O.A. Marques, M.J. Martín, J. Touriño. A 2D Algorithm with Asymmetric Workload for the UPC Conjugate Gradient Method. Journal of Supercomputing, 70(2):816-829, November 2014.
M. Rodríguez, I. Cores, P. González and M.J. Martín. Improving an MPI application-level migration approach through checkpoint file splitting. International Symposium on Computer Architecture and High Performance Computing (SBAC-PAD 2014), pp. 33-40, Paris, France,
October 2014.
N. Losada, M.J. Martín, G. Rodríguez and P. González. Extending an Application-Level Checkpointing Tool to Provide Fault Tolerance Support to OpenMP Applications. Journal of Universal Computer Science, 20(9): 1351-1372, September 2014.
J. González-Domínguez, E. Georganas, Y. Zheng and M.J. Martín. Constructing Performance Models for Dense Linear Algebra Algorithms on Cray XE Systems. ArXiv e-print: 1402.1285, 2014.
J. Gonzalez-Domínguez, O.A. Marques, M.J. Martín, J. Touriño. The Impact of Workload Strategies on a UPC-based CG. 16th SIAM Conference on Parallel Processing for Scientic Computing (abstract). Portland, Oregon (USA), February 2014.
I. Cores, G. Rodríguez, P. González and M.J. Martín. Failure avoidance in MPI applications using an application-level approach, Computer Journal, 57(1): 100-114, 2014.
G. Rodríguez, M.J. Martín, P. González, J. Touriño, R. Doallo. Compiler-assisted checkpointing of parallel codes: The Cetus and LLVM experience, International Journal of Parallel Programming, 41(6): 782-805, 2013.
J. Gonzalez-Domínguez, M.J. Martín, G. L. Taboada, R. R. Expósito and J. Touriño. The Servet 3.0 Benchmark Suite: Characterization of Network Performance Degradation, Computers and Electrical Engineering, 39(8): 2483-2493, 2013.
I. Cores, G. Rodríguez, M.J. Martín, P. González and R.R. Osorio. Improving Scalability of Application-Level Checkpoint-Recovery by Reducing Checkpoint Sizes, New Generation Computing, 31(3):163-185, 2013.
I. Cores, G. Rodríguez, M.J. Martín and P. González. Achieving Checkpointing Global Consistency through a Hybrid Compile Time and Runtime Protocol. Procedia Computer Science, 18, pp. 169-178, 2013. (International Conference on Computational Science, ICCS 2013, Barcelona
(Spain), June 2013).
J. González-Domínguez, O. García-López, G.L. Taboada, M.J. Martín, J. Touriño. Performance Evaluation of Sparse Matrix Products in UPC, Journal of Supercomputing, 64(1): 100-109, 2013.
J. González-Domínguez, O.A. Marques, M.J. Martín, G.L. Taboada, J. Touriño. Design and Performance Issues of Cholesky and LU Solvers using UPCBLAS. The 10th IEEE International Symposium on Parallel and Distributed Processing with Applications (ISPA 2012), pp. 40-47, Leganés, Spain, July 2012.
I. Cores, G. Rodríguez, M.J. Martín, P. González. Reducing application-level checkpoint file sizes: towards scalable fault tolerance solutions. The 10th IEEE International Symposium on Parallel and Distributed Processing with Applications (ISPA 2012), pp. 371-378, Leganés, Spain, July 2012.
J. González-Domínguez, M.J. Martín, G.L. Taboada, J. Touriño, R. Doallo, D.A. Mallón, B. Wibecan. UPCBLAS: a library for parallel matrix computations in Unified Parallel C, Concurrency and Computation: Practice and Experience, 24(14):1645-1667, 2012.
J. González-Domínguez, G.L. Taboada, B.B. Fraguela, M.J. Martín, J. Touriño. Automatic mapping of parallel applications on multicore architectures using the Servet benchmark suite, Computers and Electrical Engineering, 38(2): 258-269, 2012.